mgkit.mappings.go module¶
Module containing classes and functions to deal with Gene Ontology data
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class
mgkit.mappings.go.
Kegg2GOMapper
(fname=None)¶ Bases:
mgkit.kegg.KeggMapperBase
Class holding mappings KOs->GO
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columns_string
= 'go-id'¶
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load_go_names
(fname)¶
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load_goslim_mapping
(f_handle)¶
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map_kos_go
(kos, contact, skip=False)¶ Map a list of KOs to GO ids
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query_string
= 'database:(type:ko {0})'¶
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write_association_file
(f_handle)¶
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mgkit.mappings.go.
download_data
(contact, kegg_data='kegg.pickle', go_data='go_data.pickle')¶ Function to download Gene Ontology data