translate_seq - Translate Nucleotides to Aminoacids (Deprecated)¶
Overview¶
Deprecated in favour of a similar command in fasta-utils - Fasta Utilities
Translate nucleotidic sequence in amino acidic sequences
Options¶
Translate sequences from nucleotidic to amino acidic
usage: translate_seq [-h]
[-t {bac_plt,drs_mit,inv_mit,prt_mit,universal,vt_mit,yst_alt,yst_mit}]
[-p PROCESSORS] [-n BUFFER_SIZE] [-v | --quiet] [--cite]
[--manual] [--version]
[input_file] [output_file]
Positional Arguments¶
input_file | input file with aa sequences Default: - |
output_file | output file with aa sequences Default: <open file ‘<stdout>’, mode ‘w’ at 0x7fa31cd94150> |
Named Arguments¶
-t, --trans-table | |
Possible choices: bac_plt, drs_mit, inv_mit, prt_mit, universal, vt_mit, yst_alt, yst_mit translation table Default: “universal” | |
-p, --processors | |
Number of processors to use Default: 1 | |
-n, --buffer-size | |
Number of sequences to read/write at a time Default: 50000 | |
-v, --verbose | more verbose - includes debug messages Default: 20 |
--quiet | less verbose - only error and critical messages |
--cite | Show citation for the framework |
--manual | Show the script manual |
--version | show program’s version number and exit |