mgkit.filter.reads module¶
Some test functions to filter sequences
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mgkit.filter.reads.
expected_error_rate
(qualities)¶ Calculate the expected error rate for an array of qualities (converted to probabilities).
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mgkit.filter.reads.
trim_by_ee
(qualities, min_length=50, threshold=0.5, chars=True, base=33)¶ Trim a sequence based on the expected error rate.